Stem-loop lus-MIR172b

Accession

MI0021163

Description

Linum usitatissimum lus-MIR172b precursor miRNA

Literature search

1 open access papers mention lus-MIR172b
(1 sentences)

Sequence

1122 reads, 184.0 reads per million, 24 experiments

agucauuggucgcagguGCAGCAUUAUCAAGAUUCACAugcauuauauacauagaauuaaauuaaauuaacuuuaaaccuacuacuaugcuaugguagugAGAAUCUUGAUGAUGCUGCAUcagcgguauaugacu
((((((...((((.(((((((((((((((((((((.(((..((((((..(((((.......(((((.....)))))........))))).)))))).))).))))))))))))))))))))).))))...))))))

Structure

      ugg    a                     A   gc      ua     -aauuaaa     u 
agucau   ucgc gguGCAGCAUUAUCAAGAUUC CAu  auuaua  cauag        uuaaa u
||||||   |||| ||||||||||||||||||||| |||  ||||||  |||||        ||||| a
ucagua   ggcg cUACGUCGUAGUAGUUCUAAG gug  ugguau  guauc        aauuu a
      uau    a                     A   -a      -c     aucaucca     c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR172b-5p

• Accession: MIMAT0058377
• Description: Linum usitatissimum lus-miR172b-5p mature miRNA
• Sequence: 18 - GCAGCAUUAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature lus-miR172b-3p

• Accession: MIMAT0027143
• Description: Linum usitatissimum lus-miR172b-3p mature miRNA
• Sequence: 101 - AGAAUCUUGAUGAUGCUGCAU - 121
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161