Stem-loop lus-MIR164c

Accession

MI0021162

Description

Linum usitatissimum lus-MIR164c precursor miRNA

Literature search

2 open access papers mention lus-MIR164c
(3 sentences)

Sequence

47158 reads, 8049.0 reads per million, 24 experiments

acaggugggcgugagcaugaUGGAGAAGCAGGGCACGUGCAuuacuaacucguggguuuugcuccggaucgaguuagugguuCAUGUGCCCAUCUUCCCCAUCgugaaaccguugcacuuuacucugu
..(((((((((....((((((((.((((..(((((((((.((((((((((((((((......))))...)))))))))))).)))))))))..)))).))))))))....)))).)))))........

Structure

------ac     -    ugag        A    CA         C            ---    uu 
        aggug ggcg    caugaUGG GAAG  GGGCACGUG Auuacuaacucg   uggg  u
        ||||| ||||    |||||||| ||||  ||||||||| ||||||||||||   ||||   
        uucac uugc    gugCUACC CUUC  CCCGUGUAC uggugauugagc   gccu  u
ugucucau     g    caaa        C    UA         u            uag    cg 

Annotation confidence High

Genome context

Unknown

Mature lus-miR164c-5p

• Accession: MIMAT0027142
• Description: Linum usitatissimum lus-miR164c-5p mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCA - 41
• Evidence: not_experimental

Mature lus-miR164c-3p

• Accession: MIMAT0058376
• Description: Linum usitatissimum lus-miR164c-3p mature miRNA
• Sequence: 83 - CAUGUGCCCAUCUUCCCCAUC - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161