Stem-loop lus-MIR394a

Accession

MI0021161

Description

Linum usitatissimum lus-MIR394a precursor miRNA

Literature search

2 open access papers mention lus-MIR394a
(9 sentences)

Sequence

26057 reads, 4544.0 reads per million, 24 experiments

ggguuugucaaaggguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCccuacuacguacguacguacugaaaucuaucaaucucaacuaaggaggccaggugaggugaggugggcauacugccaacagAACUCUGUUGGUCUCACUUUGuaaaaccu
((((((..(((((.....((.(((((((((.((((((...((((((((((((.((((..((((....))))(((......))).((((.......))))...)))).)).))))))))))...))))))..))))))))).)).....)))))..))))))

Structure

      gu     gguuu  u         -a      UUC          -  c    -----------------------------ac    g 
ggguuu  caaag     cu acagaguuu  UUGGCA   UGUCCACCUC Cc uacu                               guac u
||||||  |||||     || |||||||||  ||||||   |||||||||| || ||||                               ||||  
uccaaa  GUUUC     GG UGUCUCAAg  aaccgu   acggguggag gg gugg                               caug a
      au     ACUCU  U         ac      cau          u  a    accggaggaaucaacucuaacuaucuaaagu    c 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR394a-5p

• Accession: MIMAT0027141
• Description: Linum usitatissimum lus-miR394a-5p mature miRNA
• Sequence: 32 - UUGGCAUUCUGUCCACCUCC - 51
• Evidence: not_experimental

Mature lus-miR394a-3p

• Accession: MIMAT0058375
• Description: Linum usitatissimum lus-miR394a-3p mature miRNA
• Sequence: 133 - AACUCUGUUGGUCUCACUUUG - 153
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161