Stem-loop lus-MIR171c

Accession

MI0021160

Description

Linum usitatissimum lus-MIR171c precursor miRNA

Literature search

3 open access papers mention lus-MIR171c
(6 sentences)

Sequence

6143 reads, 1225.0 reads per million, 24 experiments

ugaaaggugaucacugaguUAUUGGCCCGGUUCACUCAGAuggaagaugccguuuaauuuucuuaauuauucagccuagcucauuuUGAUUGAGCCGUGCCAAUAUCucaaugcuccuuuca
(((((((....((.((((.(((((((.(((((((.(((((..((....((.(..(((((.....)))))..).)).....))..))))).))))))).))))))).)))).))..)))))))

Structure

       ugau  c    u       C       C     ug  -agau  c uu     u 
ugaaagg    ca ugag UAUUGGC CGGUUCA UCAGA  ga     gc g  uaauu u
|||||||    || |||| ||||||| ||||||| |||||  ||     || |  ||||| c
acuuucc    gu acuC AUAACCG GCCGAGU AGUuu  cu     cg c  auuaa u
       --uc  a    U       U       U     ua  cgauc  a uu     u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR171c-5p

• Accession: MIMAT0058374
• Description: Linum usitatissimum lus-miR171c-5p mature miRNA
• Sequence: 20 - UAUUGGCCCGGUUCACUCAGA - 40
• Evidence: experimental ; unknown

Mature lus-miR171c-3p

• Accession: MIMAT0027140
• Description: Linum usitatissimum lus-miR171c-3p mature miRNA
• Sequence: 87 - UGAUUGAGCCGUGCCAAUAUC - 107
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161