Stem-loop lus-MIR169e

Accession

MI0021159

Description

Linum usitatissimum lus-MIR169e precursor miRNA

Literature search

2 open access papers mention lus-MIR169e
(11 sentences)

Sequence

480 reads, 143.0 reads per million, 23 experiments

gugggguaauggauuucauggugggaugggggaguaggucugAGCCAAGGAUGACUUGCCGccgcucaaaccacaauuccaugcuuugcguccauugggcugGGAAGUUGUCCUUGGCUCUAGcuuccucccuugcccauuuuccauguaagacuuuacuauccac
(((((((((.(..((.(((((((((.((((((((.((((..((((((((((((((((.(((..((((((..(.(((.........))).)....))))))))).))))))))))))))))..)))).))))))))))))....))))).))..).)))))..))))

Structure

    --     u ga  u     ----    a        u    cu                G   cc      --ac a   uuc 
gugg  gguaa g  uu caugg    uggg ugggggag aggu  gAGCCAAGGAUGACUU CCG  gcucaa    c caa   c
||||  ||||| |  || |||||    |||| |||||||| ||||  |||||||||||||||| |||  ||||||    | |||   a
cacc  ucauu c  aa guacc    accc guucccuc uucG  CUCGGUUCCUGUUGAA Ggu  cggguu    g guu   u
    ua     u ag  u     uuuu    -        c    AU                G   --      accu c   ucg 

Annotation confidence High

Genome context

Unknown

Mature lus-miR169e-5p

• Accession: MIMAT0058373
• Description: Linum usitatissimum lus-miR169e-5p mature miRNA
• Sequence: 43 - AGCCAAGGAUGACUUGCCG - 61
• Evidence: experimental ; Illumina [1]

Mature lus-miR169e-3p

• Accession: MIMAT0027139
• Description: Linum usitatissimum lus-miR169e-3p mature miRNA
• Sequence: 103 - GGAAGUUGUCCUUGGCUCUAG - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161