Stem-loop lus-MIR164b

Accession

MI0021158

Description

Linum usitatissimum lus-MIR164b precursor miRNA

Literature search

2 open access papers mention lus-MIR164b
(3 sentences)

Sequence

47495 reads, 8097.0 reads per million, 24 experiments

ggugcgugugagcaggaUGGAGAAGCAGGGCACGUGCAuuacuaacucucccagaaagaaaacccacaaagcuuuaaggucuugguuugguuugguuuucuguguuccgaguuaguuguuCAUGUGCCCAUCUUCCCCAUCaugauaccacugcauc
((((((.(((..((.(((((.((((..(((((((((.((.((((((((..((((((((.(((((..(((.(((....))).)))....)))))..))))))).)....)))))))).)).)))))))))..)))).))))).))....)))))))))

Structure

      u   --ag  g     A    CA         C  u        --uc -       -a     --ca   a   u 
ggugcg gug    ca gaUGG GAAG  GGGCACGUG Au acuaacuc    c cagaaag  aaacc    caa gcu u
|||||| |||    || ||||| ||||  ||||||||| || ||||||||    | |||||||  |||||    ||| |||  
cuacgu cac    gu CUACC CUUC  CCCGUGUAC ug ugauugag    g gucuuuu  uuugg    guu ugg a
      -   caua  a     C    UA         u  u        ccuu u       gg     uuug   c   a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR164b-5p

• Accession: MIMAT0027138
• Description: Linum usitatissimum lus-miR164b-5p mature miRNA
• Sequence: 18 - UGGAGAAGCAGGGCACGUGCA - 38
• Evidence: not_experimental

Mature lus-miR164b-3p

• Accession: MIMAT0058372
• Description: Linum usitatissimum lus-miR164b-3p mature miRNA
• Sequence: 121 - CAUGUGCCCAUCUUCCCCAUC - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161