Stem-loop lus-MIR160a

Accession

MI0021157

Description

Linum usitatissimum lus-MIR160a precursor miRNA

Literature search

2 open access papers mention lus-MIR160a
(9 sentences)

Sequence

15045 reads, 2905.0 reads per million, 24 experiments

aauggaacugaauggaguugauuacgguuugccgUGCCUGGCUCCCUGUAUGCCAucugcaagaccucauuaacagaguuuugguggggcuugcuggaugGCGUACGAGGAGCCAUGCAUGcuuuuuuaauucucaacccaccaucaacuccaucaguuccauu
(((((((((((.((((((((((...((.(((.(((((.(((((((.(((((((((((((((((.(((((((((.......)))))))))))))).)))))))))))).))))))).))))).............))).))...)))))))))))))))))))))

Structure

           a          uac  u   ------------c     C       C            -     a         ca 
aauggaacuga uggaguugau   gg uug             cgUGC UGGCUCC UGUAUGCCAucu gcaag ccucauuaa  g
||||||||||| ||||||||||   || |||             ||||| ||||||| |||||||||||| ||||| |||||||||  a
uuaccuugacu accucaacua   cc aac             GUACG ACCGAGG GCAUGCGguagg cguuc ggggugguu  g
           -          cca  c   ucuuaauuuuuuc     U       A            u     -         uu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR160a-5p

• Accession: MIMAT0027137
• Description: Linum usitatissimum lus-miR160a-5p mature miRNA
• Sequence: 35 - UGCCUGGCUCCCUGUAUGCCA - 55
• Evidence: not_experimental

Mature lus-miR160a-3p

• Accession: MIMAT0058371
• Description: Linum usitatissimum lus-miR160a-3p mature miRNA
• Sequence: 101 - GCGUACGAGGAGCCAUGCAUG - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161