Stem-loop lus-MIR395c

Accession

MI0021156

Description

Linum usitatissimum lus-MIR395c precursor miRNA

Literature search

1 open access papers mention lus-MIR395c
(8 sentences)

Sequence

4472 reads, 958.0 reads per million, 24 experiments

gucagaugUCUACUGGAGUUCCCUUGACCAcuucauuggggacucgucaucuuucgguccuaCUGAAGUGUUUGGGGGAACUCuagcagcccauuugac
((((((((.((.(((((((((((((((.(((((((...(((((.((........)))))))..))))))).))))))))))))))).))..))))))))

Structure

        -U  A               C       uug     u  uca 
gucagaug  CU CUGGAGUUCCCUUGA CAcuuca   gggac cg   u
||||||||  || ||||||||||||||| |||||||   ||||| ||    
caguuuac  ga gauCUCAAGGGGGUU GUGAAGU   uccug gc   c
        cc  c               U       -Ca     -  uuu 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR395c-5p

• Accession: MIMAT0058370
• Description: Linum usitatissimum lus-miR395c-5p mature miRNA
• Sequence: 9 - UCUACUGGAGUUCCCUUGACCA - 30
• Evidence: experimental ; unknown

Mature lus-miR395c-3p

• Accession: MIMAT0027136
• Description: Linum usitatissimum lus-miR395c-3p mature miRNA
• Sequence: 63 - CUGAAGUGUUUGGGGGAACUC - 83
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161