Stem-loop lus-MIR172a

Accession

MI0021155

Description

Linum usitatissimum lus-MIR172a precursor miRNA

Literature search

1 open access papers mention lus-MIR172a
(1 sentences)

Sequence

1290 reads, 227.0 reads per million, 24 experiments

agucguuguuugcuggcguagcaucaucaagauucacauuCCGAACUGGGAUCAUGAGAAUCUUGAUGAUGCUGCAUuggccauauacgacu
((((((.....(((((.((((((((((((((((((.((((((......)))..))).)))))))))))))))))).))))).....))))))

Structure

      uguuu     c                  a   --   GA 
agucgu     gcugg guagcaucaucaagauuc cau  uCC  A
||||||     ||||| |||||||||||||||||| |||  |||   
ucagca     cgguU CGUCGUAGUAGUUCUAAG GUA  AGG  C
      uauac     A                  A   CU   GU 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR172a-5p

• Accession: MIMAT0058369
• Description: Linum usitatissimum lus-miR172a-5p mature miRNA
• Sequence: 41 - CCGAACUGGGAUCAUGAGAAUCUU - 64
• Evidence: experimental ; unknown

Mature lus-miR172a-3p

• Accession: MIMAT0027135
• Description: Linum usitatissimum lus-miR172a-3p mature miRNA
• Sequence: 57 - AGAAUCUUGAUGAUGCUGCAU - 77
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161