Stem-loop lus-MIR171b

Accession

MI0021154

Description

Linum usitatissimum lus-MIR171b precursor miRNA

Literature search

3 open access papers mention lus-MIR171b
(6 sentences)

Sequence

5918 reads, 1180.0 reads per million, 24 experiments

cuuguuguauguauaaugaaaggcgccacugcggUAUUGGCCCGGUUCACUCAGAcacagcucgcuagcgcauauuuauauauguuUGAUUGAGCCGUGCCAAUAUCucaaugcaccuuucacucgaucgcaag
(((((.((.((.....(((((((.((...((.(((((((((.(((((((.(((((((..(((....))).............))))))).))))))).))))))))).))..)).)))))))..)))).)))))

Structure

     u  a  uauaa       c  cac  c         C       C       -----------ca   c 
cuugu gu ug     ugaaagg gc   ug ggUAUUGGC CGGUUCA UCAGAca             gcu g
||||| || ||     ||||||| ||   || ||||||||| ||||||| |||||||             |||  
gaacg ua gc     acuuucc cg   ac CUAUAACCG GCCGAGU AGUuugu             cga c
     c  -  ---uc       a  -ua  u         U       U       auauauuuauacg   u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR171b-5p

• Accession: MIMAT0058368
• Description: Linum usitatissimum lus-miR171b-5p mature miRNA
• Sequence: 35 - UAUUGGCCCGGUUCACUCAGA - 55
• Evidence: experimental ; unknown

Mature lus-miR171b-3p

• Accession: MIMAT0027134
• Description: Linum usitatissimum lus-miR171b-3p mature miRNA
• Sequence: 87 - UGAUUGAGCCGUGCCAAUAUC - 107
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161