Stem-loop lus-MIR167b

Accession

MI0021151

Description

Linum usitatissimum lus-MIR167b precursor miRNA

Literature search

3 open access papers mention lus-MIR167b
(5 sentences)

Sequence

51899 reads, 9239.0 reads per million, 24 experiments

uauaugcccaaguguuggggugagaggcUGAAGCUGCCAGCAUGAUCUUggucaacaaaagccaucuuucagcuucaaguuuugaugguugagucugaagaucAGGUCAUCUUGCAGCUUCAAUcacucacuaaccaacaccaaacuuaua
...........(((((((((((((.((.(((((((((.((.(((((((.((((..((..(((((((....((((...))))..))))))).....))..))))))))))))).))))))))).)).))))))..)))))))..........

Structure

uauaugcccaa       --      a  c         C  C       U    aa  ---aa       uuuc    u 
           guguugg  ggugag gg UGAAGCUGC AG AUGAUCU gguc  ca     agccauc    agcu  
           |||||||  |||||| || ||||||||| || ||||||| ||||  ||     |||||||    |||| c
           cacaacc  ucacuc cU ACUUCGACG UC UACUGGA cuag  gu     uugguag    uuga  
-auauucaaac       aa      a  A         U  -       -    aa  cugag       --uu    a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR167b-5p

• Accession: MIMAT0027131
• Description: Linum usitatissimum lus-miR167b-5p mature miRNA
• Sequence: 29 - UGAAGCUGCCAGCAUGAUCUU - 49
• Evidence: not_experimental

Mature lus-miR167b-3p

• Accession: MIMAT0058366
• Description: Linum usitatissimum lus-miR167b-3p mature miRNA
• Sequence: 104 - AGGUCAUCUUGCAGCUUCAAU - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161