Stem-loop lus-MIR164a

Accession

MI0021149

Description

Linum usitatissimum lus-MIR164a precursor miRNA

Literature search

2 open access papers mention lus-MIR164a
(3 sentences)

Sequence

47194 reads, 8053.0 reads per million, 24 experiments

uggugcgugugagcaggaUGGAGAAGCAGGGCACGUGCAuuacuaacucucccaccccccagcagcacuucaaccaagaagaaaaccguucugaguuaguuguuCAUGUGCCCAUCUUCCCCAUCaugauaccacugcaucg
.((((((.(((..((.(((((.((((..(((((((((.((.((((((((..................((((......))))...........)))))))).)).)))))))))..)))).))))).))....))))))))).

Structure

u      u   --ag  g     A    CA         C  u        ucccaccccccagcagca    aa 
 ggugcg gug    ca gaUGG GAAG  GGGCACGUG Au acuaacuc                  cuuc  c
 |||||| |||    || ||||| ||||  ||||||||| || ||||||||                  ||||   
 cuacgu cac    gu CUACC CUUC  CCCGUGUAC ug ugauugag                  gaag  c
g      -   caua  a     C    UA         u  u        -------ucuugccaaaa    aa 

Annotation confidence High

Genome context

Unknown

Mature lus-miR164a-5p

• Accession: MIMAT0027129
• Description: Linum usitatissimum lus-miR164a-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: not_experimental

Mature lus-miR164a-3p

• Accession: MIMAT0058365
• Description: Linum usitatissimum lus-miR164a-3p mature miRNA
• Sequence: 105 - CAUGUGCCCAUCUUCCCCAUC - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161