Stem-loop lus-MIR169d

Accession

MI0021148

Description

Linum usitatissimum lus-MIR169d precursor miRNA

Literature search

2 open access papers mention lus-MIR169d
(10 sentences)

Sequence

597 reads, 120.0 reads per million, 24 experiments

ggguguuacaugaaagaucagaacuuguuuggUAGCCAAGGAUGACUUGCCCAcauuucucugcugcuagcugcaucuuacuuaacaguacagaaauuaaggaauuguuuugGGCAGUCUCCUUGGUUAUGcugacaguuuacaaucucucaugcuaugccc
((((((..(((((.((((..(((((.(((..(((((((((((.((((.(((((((.((((.(((........)))(((((((....)))).)))......)))).)))...)))))))))))))))))))...))))))))...)))).)))))..))))))

Structure

      ua     a    -ca     u   -ug           U    U    ---   u    cugcugcuagcugca   -    u 
gggugu  cauga agau   gaacu guu   gUAGCCAAGGA GACU GCCC   Aca uucu               ucu uacu a
||||||  ||||| ||||   ||||| |||   ||||||||||| |||| ||||   ||| ||||               ||| ||||  
cccgua  guacu ucua   uuuga cag   UAUUGGUUCCU CUGA CGGg   ugu aagg               aga auga a
      uc     c    aca     -   ucG           -    -    uuu   u    ---------aauuaa   c    c 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR169d-5p

• Accession: MIMAT0027128
• Description: Linum usitatissimum lus-miR169d-5p mature miRNA
• Sequence: 33 - UAGCCAAGGAUGACUUGCCCA - 53
• Evidence: not_experimental

Mature lus-miR169d-3p

• Accession: MIMAT0058364
• Description: Linum usitatissimum lus-miR169d-3p mature miRNA
• Sequence: 113 - GGCAGUCUCCUUGGUUAUG - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161