Stem-loop lus-MIR169c

Accession

MI0021147

Description

Linum usitatissimum lus-MIR169c precursor miRNA

Literature search

2 open access papers mention lus-MIR169c
(10 sentences)

Sequence

60 reads, 15.0 reads per million, 17 experiments

agaaaagagguugcuaacaugaagagagaagccaauuguuuggUAGCCAAGGAUGACUUGCCUGcuccuagacauuucgauuuucgagguuuggaucggaaaucauuguuuagaacagguugucaGGCAGUCACCUUGGCUAACUugacaagcuucucucccucauguuagccccucauuuucu
((((((((((..((((((((((.(((((((((...(((((.(((((((((((.(((((.((((((.((((((((....(((((((((........)))))))))..))))).....)))..).)))))))))))))))))).))).))))))))))))))..)))))))))).)))).))))))

Structure

      -    uu          -a         caa     u   -        A     U     - -u   -----     uuuc         ggu 
agaaaa gagg  gcuaacauga  gagagaagc   uuguu ggU AGCCAAGG UGACU GCCUG c  ccu     agaca    gauuuucga   u
|||||| ||||  ||||||||||  |||||||||   ||||| ||| |||||||| ||||| ||||| |  |||     |||||    |||||||||    
ucuuuu cucc  cgauuguacu  cucucuucg   aacag UCA UCGGUUCC ACUGA CGGac g  gga     uuugu    cuaaaggcu   u
      a    -c          cc         ---     u   A        -     -     u uu   caaga     --ua         agg 

Annotation confidence High

Genome context

Unknown

Mature lus-miR169c-5p

• Accession: MIMAT0027127
• Description: Linum usitatissimum lus-miR169c-5p mature miRNA
• Sequence: 44 - UAGCCAAGGAUGACUUGCCUG - 64
• Evidence: not_experimental

Mature lus-miR169c-3p

• Accession: MIMAT0058363
• Description: Linum usitatissimum lus-miR169c-3p mature miRNA
• Sequence: 126 - GGCAGUCACCUUGGCUAACU - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161