Stem-loop lus-MIR169b

Accession

MI0021146

Description

Linum usitatissimum lus-MIR169b precursor miRNA

Literature search

2 open access papers mention lus-MIR169b
(10 sentences)

Sequence

134 reads, 29.0 reads per million, 20 experiments

gguuugucaggcAGUCUUCUUGGCUAUGCUGACAGAcucuuuucauucauguuaagcuuucuuuuccucgaaaucacgauuuauaaaaagcacauauauauacgggaggaaggagggucuuacaugaagaaaagaguguauuguuugcUAGCCAAGGAUGACUUGCCUGcagcu
((((.(.(((((((((((((((((((.((.((((((((((((((.(((((((.(((((((((((((((((................................)))).)))))))))).)))))))))))))))))))...))))).)))))))))))).))).)))))))))))

Structure

    u u      -   -          U  U     ---         a       u   -          -    aaaucacgauuuaua 
gguu g caggcA GUC UUCUUGGCUA GC GACAG   Acucuuuuc uucaugu aag cuuucuuuuc cucg               a
|||| | |||||| ||| |||||||||| || |||||   ||||||||| ||||||| ||| |||||||||| ||||                
ucga c GUCCGU CAG AGGAACCGAU cg uuguu   ugagaaaag aaguaca uuc gggaggaagg gggc               a
    - -      U   U          -  u     aug         -       -   u          a    auauauauacacgaa 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR169b-5p

• Accession: MIMAT0058362
• Description: Linum usitatissimum lus-miR169b-5p mature miRNA
• Sequence: 13 - AGUCUUCUUGGCUAUGCUGACAGA - 36
• Evidence: experimental ; unknown

Mature lus-miR169b-3p

• Accession: MIMAT0027126
• Description: Linum usitatissimum lus-miR169b-3p mature miRNA
• Sequence: 149 - UAGCCAAGGAUGACUUGCCUG - 169
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161