Stem-loop lus-MIR169a

Accession

MI0021145

Description

Linum usitatissimum lus-MIR169a precursor miRNA

Literature search

2 open access papers mention lus-MIR169a
(13 sentences)

Sequence

803 reads, 151.0 reads per million, 24 experiments

aggaccaggguguuacaUGAAAGAUCAGAACUUGUUUGGuagccaaggaugacuugcccacauuucucugcugcuagcugcaucuuacuuacagaguuugucugggcagucuccuugguuaugcUGACAGGUUAUGAUCUCUCAUGuuaugcccuuuguucu
(((((.(((((((.((((((.((((((.((((((((..(((((((((((.((((.(((((.((..(((((.(((.....))).........)))))...)).))))))))))))))))))))...)))))))).)))))).)))))).)))))))..)))))

Structure

     -c       u      A      G        -UG           u    u     c  -uu     --------c   u 
aggac  agggugu acaUGA AGAUCA AACUUGUU   Guagccaagga gacu gccca au   cucug         ugc a
|||||  ||||||| |||||| |||||| ||||||||   ||||||||||| |||| ||||| ||   |||||         ||| g
ucuug  ucccgua uGUACU UCUAGU UUGGACAG   uauugguuccu cuga cgggu ug   gagac         acg c
     uu       u      C      A        Ucg           -    -     c  uuu     auucauucu   u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR169a-5p

• Accession: MIMAT0027125
• Description: Linum usitatissimum lus-miR169a-5p mature miRNA
• Sequence: 18 - UGAAAGAUCAGAACUUGUUUGG - 39
• Evidence: experimental ; Ilumina[1]

Mature lus-miR169a-3p

• Accession: MIMAT0058361
• Description: Linum usitatissimum lus-miR169a-3p mature miRNA
• Sequence: 125 - UGACAGGUUAUGAUCUCUCAUG - 146
• Evidence: experimental ; Ilumina[1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161