Stem-loop lus-MIR167a

Accession

MI0021144

Description

Linum usitatissimum lus-MIR167a precursor miRNA

Literature search

3 open access papers mention lus-MIR167a
(5 sentences)

Sequence

123981 reads, 20971.0 reads per million, 24 experiments

cgugcgccacuacagcaguUGAAGCUGCCAGCAUGAUCUCaacuuuugcucucccucagagcgcaaagaugaaAGAUCAUCUGGCAGUUUCACCuuuuguuggcuccacg
((((.((((..((((.((.((((((((((((.(((((((((.((((((((((.....)))))).)))).)))..)))))))))))))))))).)).))))))))..))))

Structure

    -c    cu    c  u            C      --   a    -      c 
cgug  gcca  acag ag UGAAGCUGCCAG AUGAUC  UCa cuuu ugcucu c
||||  ||||  |||| || |||||||||||| ||||||  ||| |||| |||||| c
gcac  cggu  uguu uC ACUUUGACGGUC UACUAG  agu gaaa gcgaga u
    cu    --    u  C            -      Aa   a    c      c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR167a-5p

• Accession: MIMAT0027124
• Description: Linum usitatissimum lus-miR167a-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCUC - 40
• Evidence: experimental ; qRT-PCR [1]

Mature lus-miR167a-3p

• Accession: MIMAT0058360
• Description: Linum usitatissimum lus-miR167a-3p mature miRNA
• Sequence: 74 - AGAUCAUCUGGCAGUUUCACC - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161