Stem-loop lus-MIR319a

Accession

MI0021143

Description

Linum usitatissimum lus-MIR319a precursor miRNA

Literature search

3 open access papers mention lus-MIR319a
(28 sentences)

Sequence

756257 reads, 96958.0 reads per million, 24 experiments

agAGAGCUUUCUUCAGUCCACUCAuggguggcaauaaggauuuaauuagcugccgacucauucauccaaauacuguguguaguauauuuaaucagcaugguaaaugagugaaugaugcgggagacaaauugaaucuuaagcuuccuguaCUUGGACUGAAGGGAGCUCCCU
((.(((((((((((((((((...(((((.(((....(((((((((((.(((.(((..((((((((.((..((((((((....((....))....))))))))..)).))))))))..))).)).).)))))))))))..))).)))))...))))))))))))))))).))

Structure

  A                 CUC     u   aaua           a -  g   ac        c  aa        guag  u 
ag GAGCUUUCUUCAGUCCA   Auggg ggc    aggauuuaauu g cu ccg  ucauucau ca  uacugugu    ua a
|| |||||||||||||||||   ||||| |||    ||||||||||| | || |||  |||||||| ||  ||||||||    ||  
UC CUCGAGGGAAGUCAGGU   ugucc ucg    uucuaaguuaa c ga ggc  aguaagug gu  augguacg    au u
  C                 UCa     u   --aa           a a  g   gu        a  aa        acua  u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR319a-5p

• Accession: MIMAT0058359
• Description: Linum usitatissimum lus-miR319a-5p mature miRNA
• Sequence: 3 - AGAGCUUUCUUCAGUCCACUCA - 24
• Evidence: experimental ; unknown

Mature lus-miR319a-3p

• Accession: MIMAT0027123
• Description: Linum usitatissimum lus-miR319a-3p mature miRNA
• Sequence: 150 - CUUGGACUGAAGGGAGCUCCCU - 171
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161