Stem-loop lus-MIR171a

Accession

MI0021142

Description

Linum usitatissimum lus-MIR171a precursor miRNA

Literature search

3 open access papers mention lus-MIR171a
(6 sentences)

Sequence

2113 reads, 457.0 reads per million, 23 experiments

gaaaggCGAUAUUGGUGGGGUUCAAUCcgauaacggauuuuuacaucaaaauuaacagcaacagcucuauacccauucaucuuggugguuguuauauuauaguaaaauacgaucucAGAUUGAGCCGCGCCAAUAUCacuuuuc
((((((.((((((((((.(((((((((.((...((...((((((........(((((((..((.(..................).))))))))).......))))))..))...)).))))))))).)))))))))).))))))

Structure

      C          G         c  uaa  gau      aucaaaau       aa  g ucuauacc 
gaaagg GAUAUUGGUG GGUUCAAUC ga   cg   uuuuac        uaacagc  ca c        c
|||||| |||||||||| ||||||||| ||   ||   ||||||        |||||||  || |         
cuuuuc CUAUAACCGC CCGAGUUAG cu   gc   aaaaug        auuguug  gu g        a
      a          G         A  cua  -au      -auauuau       --  g uucuacuu 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR171a-5p

• Accession: MIMAT0058358
• Description: Linum usitatissimum lus-miR171a-5p mature miRNA
• Sequence: 7 - CGAUAUUGGUGGGGUUCAAUC - 27
• Evidence: experimental ; unknown

Mature lus-miR171a-3p

• Accession: MIMAT0027122
• Description: Linum usitatissimum lus-miR171a-3p mature miRNA
• Sequence: 117 - AGAUUGAGCCGCGCCAAUAUC - 137
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161