miRBase entry: cca-MIR6117

Stem-loop cca-MIR6117


Accession
MI0021110
Description
Cynara cardunculus cca-MIR6117 precursor miRNA


Sequence

cucaugGGUUAGGUUGAUCGGGUUGAAGACauuugaacaacacaauccaauguuugugguuugaaaaaucuuaacccaacccaaccuagcccguacgg
...(((((((((((((...(((((((.((..(((((((..(((((........))))))))))))...)))))))))....)))))))))))))....

Structure
-cuc             -AUC       A  -Ca       aa     ucc 
    augGGUUAGGUUG    GGGUUGA GA   uuugaac  cacaa   a
    |||||||||||||    ||||||| ||   |||||||  |||||    
    ugcccgauccaac    cccaauu cu   aaguuug  guguu   a
ggca             ccaa       -  aaa       --     ugu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR6117

Accession MIMAT0024564
Description Cynara cardunculus cca-miR6117 mature miRNA
Sequence 7 - GGUUAGGUUGAUCGGGUUGAAGAC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41