miRBase entry: cca-MIR6115

Stem-loop cca-MIR6115


Accession
MI0021107
Description
Cynara cardunculus cca-MIR6115 precursor miRNA


Sequence

cguucaUCUGGACGGUAUGCACAUGUGCAUacaaguaauuuguaaggaauuugaccuguauguacaugcacacgugcauagaaaccaagaaacaccuucaguuacuuguaugcacaugugcauaucauacagaugaacgg
((((((((((...(((((((((((((((((((((((((((.(.((((..((((...(.(((((((........))))))).)...)))).....))))))))))))))))))))))))))))))))...)))))))))).

Structure
-          GAC                           u u    ---aa    acc g       aug 
 cguucaUCUG   GGUAUGCACAUGUGCAUacaaguaauu g aagg     uuug   u uauguac   c
 ||||||||||   ||||||||||||||||||||||||||| | ||||     ||||   | |||||||    
 gcaaguagac   cuauacguguacacguauguucauuga c uucc     gaac   a auacgug   a
g          aua                           - -    acaaa    caa g       cac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR6115

Accession MIMAT0024560
Description Cynara cardunculus cca-miR6115 mature miRNA
Sequence 7 - UCUGGACGGUAUGCACAUGUGCAU - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41