miRBase entry: cca-MIR6108f

Stem-loop cca-MIR6108f


Accession
MI0021106
Description
Cynara cardunculus cca-MIR6108f precursor miRNA

Literature search
1 open access papers mention cca-MIR6108f
(2 sentences)

Sequence

ggaaguUAUGGUGAGAAGGGUAAGAAGggaucuccacccuuggauaaauccuaauuggauaucaacacuaaugagaugcacuagaucaauucccaugagaagcgcaauucaugggauggggugagauuaaaagugaucacccuucuuacgcuucucaccuuaauuccua
((((.(((.(((((((((.(((((((((((((((.(((((..((((..(((.....)))))))...........(((.......)))...(((((((((........))))))))).))))))))))............)))))))))).))))))))).)))))))..

Structure
--    g   U         G          ------------     c     uggauaaauccuaauuggauaucaacacuaaugagaugcacuagaucaau         aag 
  ggaa uUA GGUGAGAAG GUAAGAAGgg            aucuc acccu                                                  ucccaugag   c
  |||| ||| ||||||||| ||||||||||            ||||| |||||                                                  |||||||||    
  ccuu aau ccacucuuc cauucuuccc            uagag ugggg                                                  aggguacuu   g
au    -   u         g          acuagugaaaau     -     -------------------------------------------------u         aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR6108f

Accession MIMAT0024559
Description Cynara cardunculus cca-miR6108f mature miRNA
Sequence 7 - UAUGGUGAGAAGGGUAAGAAG - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41