Stem-loop cca-MIR6105a

Accession

MI0021090

Description

Cynara cardunculus cca-MIR6105a precursor miRNA

Sequence

ugagaucaugugagaccaaccuauuuuugugagacccgugagaccaacuguuuacauuuaaaacuucacuguaaaacacugugaaaaguaacuuuuucacaacaauauuuuugccaugaagguucagauauuuuauuuucacaguguuuuauaacgaaguuucaaguauaaauauaggguuucacaagucuuACGAAAACAUGUUGGUCUCACGUGa
.....(((((((((((((((...((((((((((((..((((((((...((((((.((((.(((((((..((((((((((((((((((.(((............(((((((..(((.....)))..))))))))))))))))))))))))))))..))))))).)))).))))))...))))))))..))))))))))))...)))))))))))))))

Structure

ugaga               cua            cc        aac      c    a       ac                  g   cuuuuucacaac       uu   a 
     ucaugugagaccaac   uuuuugugagac  gugagacc   uguuua auuu aaacuuc  uguaaaacacugugaaaa uaa            aauauuu  gcc u
     |||||||||||||||   ||||||||||||  ||||||||   |||||| |||| |||||||  |||||||||||||||||| |||            |||||||  ||| g
     aGUGCACUCUGGUUG   AAAAGCAuucug  cacuuugg   auaaau ugaa uuugaag  auauuuugugacacuuuu auu            uuauaga  ugg a
-----               UAC            aa        gau      a    c       ca                  -   ------------       cu   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6105a

• Accession: MIMAT0024538
• Description: Cynara cardunculus cca-miR6105a mature miRNA
• Sequence: 193 - ACGAAAACAUGUUGGUCUCACGUG - 216
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41