Stem-loop cca-MIR398

Accession

MI0021085

Description

Cynara cardunculus cca-MIR398 precursor miRNA

Literature search

2 open access papers mention cca-MIR398
(12 sentences)

Sequence

acccaacagggugugauaugagaacacauauauaagaugcaacaacauguaguacuugguauuuuauuaUGUGUUCUCAGGUCGCCCCUGcaggguuuuc
((((..(((((.(((((.((((((((((((.(((((((((....((.....)).....))))))))))))))))))))).))))))))))..))))....

Structure

----    aa     u     a            u         -aaca  a 
    accc  caggg gugau ugagaacacaua auaagaugc     ac u
    ||||  ||||| ||||| |||||||||||| |||||||||     || g
    uggg  GUCCC CGCUG ACUCUUGUGUau uauuuuaug     ug u
cuuu    ac     -     G            -         guuca  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR398

• Accession: MIMAT0024532
• Description: Cynara cardunculus cca-miR398 mature miRNA
• Sequence: 70 - UGUGUUCUCAGGUCGCCCCUG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41