miRBase entry: mse-mir-9a

Stem-loop mse-mir-9a

Accession

MI0021022

Description

Manduca sexta mse-mir-9a precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

gacgccaaaucccgccgcggcccgucucuuugguauccuagcuguaggcgucccgugagcccUAAAGUUAUGGUACCGAAGUUAcgagucgcgucgcacgca
............((.((((((.(((..((((((((((.(((((.((((..((....))..)))).))))).))))))))))..))).)))))).))......

Structure

gacgccaaaucc  c      c   cu          c     g    cg  c 
            cg cgcggc cgu  cuuugguauc uagcu uagg  uc c
            || |||||| |||  |||||||||| ||||| ||||  ||  
            gc gcgcug gcA  GAAGCCAUGG AUUGA AUcc  ag g
------acgcac  u      a   UU          U     A    cg  u

Annotation confidence Not enough data

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Genome context

JH668930.1: 82977-83078 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mse-mir-9a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-9a

Accession	MIMAT0024473
Description	Manduca sexta mse-miR-9a mature miRNA
Sequence	63 - UAAAGUUAUGGUACCGAAGUUA - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395