Stem-loop ppy-mir-3170

Accession

MI0020945

Description

Pongo pygmaeus ppy-mir-3170 precursor miRNA

Sequence

ccuuaugucaucugguaacaCUGGGGUUCUGAGACAGACAGuguuagcuccagaagcauugccugucuuagaaccccuauguuaccagacgacauaggagugaauaaaauc
.((((((((.((((((((((..(((((((((((((((.(((((((.........))))))).)))))))))))))))..)))))))))).)))))))).............

Structure

------------c        a          CU               A       agc 
             cuuauguc ucugguaaca  GGGGUUCUGAGACAG CAGuguu   u
             |||||||| ||||||||||  ||||||||||||||| |||||||   c
             ggauacag agaccauugu  ccccaagauucuguc guuacga   c
cuaaaauaaguga        c          au               c       aga 

Annotation confidence Not enough data

Genome context

chr13: 100533086-100533196 [+]

Mature ppy-miR-3170

• Accession: MIMAT0024397
• Description: Pongo pygmaeus ppy-miR-3170 mature miRNA
• Sequence: 21 - CUGGGGUUCUGAGACAGACAG - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116