Stem-loop ppy-mir-4484

Accession

MI0020931

Description

Pongo pygmaeus ppy-mir-4484 precursor miRNA

Sequence

agugucugggguuuccucugccuuuuuuuccaaugaaaauaacgaaaccucuuauuucccauugagggggAAAAAGGCGGGAGAAGCCCCGgcaggacugaagcugcuccu
......(((((((((.(((((((((((((((((((.((((((.((....))))))))..))))...))))))))))))))).)))))))))((((........))))....

Structure

--------------aguguc         c               ---    -a      c  a 
                    ugggguuuc ucugccuuuuuuucc   aaug  aaauaa ga a
                    ||||||||| |||||||||||||||   ||||  |||||| ||  
                    GCCCCGAAG GGGCGGAAAAAgggg   uuac  uuuauu cu c
uccucgucgaagucaggacg         A               gag    cc      -  c 

Annotation confidence Not enough data

Genome context

chr10: 125468833-125468943 [+]

Mature ppy-miR-4484

• Accession: MIMAT0024383
• Description: Pongo pygmaeus ppy-miR-4484 mature miRNA
• Sequence: 71 - AAAAAGGCGGGAGAAGCCCCG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116