Stem-loop ppy-mir-548c

Accession

MI0020927

Description

Pongo pygmaeus ppy-mir-548c precursor miRNA

Literature search

1 open access papers mention ppy-mir-548c
(2 sentences)

Sequence

uauugcuauuagguuggugcAAAAGUACUUGCGGAUUUUGcuuuacuuuuaauggcaaaaaccgcaauuaguuuugcuucaaccuaauagaugcaaaguuggcuacaacug
.....((((((((((((.((((((.((.((((((.(((((((...........))))))).)))))).)).)))))).))))))))))))......(((((....))))).

Structure

----------------uauug            u      G  C      A       uuac 
                     cuauuagguugg gcAAAA UA UUGCGG UUUUGcu    u
                     |||||||||||| |||||| || |||||| |||||||    u
                     gauaauccaacu cguuuu au aacgcc aaaacgg    u
gucaacaucgguugaaacgua            u      g  u      a       uaau 

Annotation confidence Not enough data

Genome context

chr11: 5726325-5726435 [-]

Mature ppy-miR-548c

• Accession: MIMAT0024379
• Description: Pongo pygmaeus ppy-miR-548c mature miRNA
• Sequence: 21 - AAAAGUACUUGCGGAUUUUG - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116