Stem-loop ppy-mir-548h

Accession

MI0020925

Description

Pongo pygmaeus ppy-mir-548h precursor miRNA

Literature search

1 open access papers mention ppy-mir-548h
(2 sentences)

Sequence

guuugucauuagaaaauaauauuagguuggagcAAAAGUAAUUGCGGUUUUUGuauugcuuucaaugauaaaagccagaauuacuuuugcaccaacuuaauaugauaaauuu
((((((((...........(((((((((((.((((((((((((..(((((((((((((....)))).)))))))))..)))))))))))).)))))))))))))))))))..

Structure

--        uuagaaaauaa           a            GC         -    c 
  guuuguca           uauuagguugg gcAAAAGUAAUU  GGUUUUUGu auug u
  ||||||||           ||||||||||| ||||||||||||  ||||||||| ||||  
  uaaauagu           auaauucaacc cguuuucauuaa  ccgaaaaua uaac u
uu        -----------           a            ga         g    u 

Annotation confidence Not enough data

Genome context

NW_002923583.1: 1200-1311 [+]

Mature ppy-miR-548h

• Accession: MIMAT0024377
• Description: Pongo pygmaeus ppy-miR-548h mature miRNA
• Sequence: 34 - AAAAGUAAUUGCGGUUUUUG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116