Stem-loop ppy-mir-3660

Accession

MI0020919

Description

Pongo pygmaeus ppy-mir-3660 precursor miRNA

Sequence

agugaaaaggagaaagaagaacuggacaaaauuaaaaugcucuucugucauuguaauaguucauaugggCACUGACAGGAGAGCAUUUUGAcuuugucaagugugucugcu
..............(((...(((.((((((.(((((((((((((((((((.(((.(((.....)))..))).))))))))))))))))))).)))))).)))...)))...

Structure

agugaaaaggagaa   aga   g      a                   u   -a   g 
              aga   acu gacaaa uuaaaaugcucuucuguca ugu  aua u
              |||   ||| |||||| ||||||||||||||||||| |||  ||| u
              ucu   uga cuguuu AGUUUUACGAGAGGACAGU ACg  uau c
-----------ucg   gug   a      c                   C   gg   a 

Annotation confidence Not enough data

Genome context

chr5: 90602296-90602406 [-]

Mature ppy-miR-3660

• Accession: MIMAT0024371
• Description: Pongo pygmaeus ppy-miR-3660 mature miRNA
• Sequence: 70 - CACUGACAGGAGAGCAUUUUGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116