Stem-loop ppy-mir-1193

Accession

MI0020917

Description

Pongo pygmaeus ppy-mir-1193 precursor miRNA

Sequence

ugcucuccaggguagcugagGGGAUGGUAGACCGGUGACGUGCacuucauuuacgauguaggucacccguuugacuauccaccagcgcccgguccaucugugggaugacaucu
......((.((((.((((.(.(((((((((((.((((((.((((..((......)))))).)))))).)))).))))))).)))))))))))..(((((...)))))......

Structure

---------------ugcucu  a    a    a G       -    C      G    cu  au 
                     cc gggu gcug g GGAUGGU AGAC GGUGAC UGCa  uc  u
                     || |||| |||| | ||||||| |||| |||||| ||||  ||   
                     gg cccg cgac c ccuauca uuug ccacug augu  ag  u
ucuacaguagggugucuaccu  -    -    - a       g    c      g    --  ca 

Annotation confidence Not enough data

Genome context

chr14: 102591485-102591597 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppy-mir-1193

Mature ppy-miR-1193

• Accession: MIMAT0024369
• Description: Pongo pygmaeus ppy-miR-1193 mature miRNA
• Sequence: 21 - GGGAUGGUAGACCGGUGACGUGC - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116