Stem-loop ppy-mir-3943

Accession

MI0020911

Description

Pongo pygmaeus ppy-mir-3943 precursor miRNA

Sequence

acagacggcagcugcggccUAGCCCCCAGGCUUCACUUGGCGuggacaacuugcuaaguaaaguggggggugggccacggcuggcuccuaccuggacaggccuccagcuaac
...((.(.((((((.((((((.(((((..((((.((((((((.(.....).)))))))).))))))))).)))))).)))))).)))....(((((......))))).....

Structure

----------------------aca  c g      c      G     AG    C        u g 
                         ga g cagcug ggccUA CCCCC  GCUU ACUUGGCG g a
                         || | |||||| |||||| |||||  |||| |||||||| | c
                         cu c gucggc ccgggu ggggg  ugaa ugaaucgu c a
caaucgaccuccggacagguccauc  - g      a      g     --    a        u a 

Annotation confidence Not enough data

Genome context

chr7: 40942157-40942268 [-]

Mature ppy-miR-3943

• Accession: MIMAT0024363
• Description: Pongo pygmaeus ppy-miR-3943 mature miRNA
• Sequence: 20 - UAGCCCCCAGGCUUCACUUGGCG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116