Stem-loop ggo-mir-125a

Accession

MI0020680

Description

Gorilla gorilla ggo-mir-125a precursor miRNA

Literature search

1 open access papers mention ggo-mir-125a
(1 sentences)

Sequence

ccauguugccagucucuaggUCCCUGAGACCCUUUAACCUGugaggacauccagggucacaggugagguucuugggagccuggugucuggcccaaccacacaccuggg
.......(((((.(.((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).)))))).).)))))....(((......))).

Structure

----------ccauguu     u u      C       C    UA        ----  a 
                 gccag c cuaggU CCUGAGA CCUU  ACCUGuga    gg c
                 ||||| | |||||| ||||||| ||||  ||||||||    ||  
                 cgguc g gguccg ggguucu ggag  uggacacu    cc a
ggguccacacaccaacc     u u      a       u    --        ggga  u 

Annotation confidence Not enough data

Genome context

chr19: 51004406-51004513 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-125a

Mature ggo-miR-125a

• Accession: MIMAT0024133
• Description: Gorilla gorilla ggo-miR-125a mature miRNA
• Sequence: 21 - UCCCUGAGACCCUUUAACCUG - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116