Stem-loop ptr-mir-548e

Accession

MI0020604

Description

Pan troglodytes ptr-mir-548e precursor miRNA

Literature search

1 open access papers mention ptr-mir-548e
(2 sentences)

Sequence

cuucugugaucuauggcuuuauuagguugguacaaaagcauucgcgguuuuugcuauuacuuuuaaaggcAAAAACUGCGACUACUUUUGcaccaaccugauagaaga
.................((((((((((((((.((((((...((((((((((((((.(((....))).))))))))))))))...)))))).))))))))))))))...

Structure

cuucugugaucuauggc              a      cau              a   c 
                 uuuauuagguuggu caaaag   ucgcgguuuuugcu uua u
                 |||||||||||||| ||||||   |||||||||||||| |||  
                 agauaguccaacca GUUUUC   AGCGUCAAAAAcgg aau u
--------------aga              c      AUC              a   u 

Annotation confidence Not enough data

Genome context

chr10: 112595886-112595993 [+]

Mature ptr-miR-548e

• Accession: MIMAT0024057
• Description: Pan troglodytes ptr-miR-548e mature miRNA
• Sequence: 71 - AAAAACUGCGACUACUUUUG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116