Stem-loop cgr-mir-615

Accession

MI0020543

Description

Cricetulus griseus cgr-mir-615 precursor miRNA

Sequence

6545 reads, 91 reads per million, 6 experiments

ggggcgggagGGGGGUCCCCGGUGCUCGGAUCucgagggugcuuauuguucggUCCGAGCCUGGGUCUCCCUCUUccccccauc
((((.((((((((((..(((((.((((((((..((((.(.......).)))))))))))))))))..))))))))))))))...

Structure

---    c          UC     U        Cu    g ug 
   gggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
   |||| ||||||||||  ||||| ||||||||  |||| |  u
   cccc ccUUCUCCCU  GGGUC CGAGCCUg  gcuu u  u
cua    -          CU     -        --    g ua 

Annotation confidence Low

Genome context

JH000760.1: 38218-38301 [-]

Mature cgr-miR-615-5p

• Accession: MIMAT0023987
• Description: Cricetulus griseus cgr-miR-615-5p mature miRNA
• Sequence: 11 - GGGGGUCCCCGGUGCUCGGAUC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-615-3p

• Accession: MIMAT0023988
• Description: Cricetulus griseus cgr-miR-615-3p mature miRNA
• Sequence: 54 - UCCGAGCCUGGGUCUCCCUCUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75