Stem-loop cgr-mir-532

Accession

MI0020539

Description

Cricetulus griseus cgr-mir-532 precursor miRNA

Sequence

3935 reads, 55 reads per million, 6 experiments

uuucucuuuCAUGCCUUGAGUGUAGGACCGUuaacauccuaauuacCCUCCCACACCCAAGGUUUGCaggagagcaa
.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)))))))...

Structure

--u       u  U      A    A   CC  uaaca 
   uucucuu CA GCCUUG GUGU GGA  GU     u
   ||||||| || |||||| |||| |||  ||     c
   gagagga GU UGGAAC CACA CCU  ca     c
aac       C  U      C    C   CC  uuaau 

Annotation confidence Not enough data

Genome context

JH000611.1: 77734-77810 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-532

Mature cgr-miR-532-5p

• Accession: MIMAT0023981
• Description: Cricetulus griseus cgr-miR-532-5p mature miRNA
• Sequence: 10 - CAUGCCUUGAGUGUAGGACCGU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-532-3p

• Accession: MIMAT0023982
• Description: Cricetulus griseus cgr-miR-532-3p mature miRNA
• Sequence: 47 - CCUCCCACACCCAAGGUUUGC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75