Stem-loop cgr-mir-425

Accession

MI0020524

Description

Cricetulus griseus cgr-mir-425 precursor miRNA

Sequence

46867 reads, 653 reads per million, 6 experiments

gugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaagaagcCAUCGGGAAUGUCGUGUCCGCccagugcucu
(.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).).

Structure

- u  u    AAU       U  C     UUGA    gcacc 
 g gc uugg   GACACGA CA UCCCG    gugg     c
 | || ||||   ||||||| || |||||    ||||      
 c cg gacc   CUGUGCU GU AGGGC    UACc     a
u u  u    CGC       -  A     ----    gaaga 

Annotation confidence High

Genome context

JH001800.1: 109479-109558 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-425

Mature cgr-miR-425-5p

• Accession: MIMAT0023958
• Description: Cricetulus griseus cgr-miR-425-5p mature miRNA
• Sequence: 10 - AAUGACACGAUCACUCCCGUUGA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-425-3p

• Accession: MIMAT0023959
• Description: Cricetulus griseus cgr-miR-425-3p mature miRNA
• Sequence: 50 - CAUCGGGAAUGUCGUGUCCGC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75