miRBase entry: cgr-mir-365

Stem-loop cgr-mir-365


Accession
MI0020511
Description
Cricetulus griseus cgr-mir-365 precursor miRNA
Gene family
MIPF0000061; mir-365


Sequence

7701 reads, 74 reads per million, 6 experiments
gggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauuccgcuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugca
(((..((((((((..(((((((((((..((((...............)))).))))))))))).)))))))).))).....

Structure
-----   aa        AC           GA    uuucca 
     ggg  aaugAGGG  UUUUGGGGGCA  UGUG      u
     |||  ||||||||  |||||||||||  ||||      u
     cuc  uUAUUCCU  AAAAUCCCCGU  AUac      c
acguu   -g        -A           -A    uaucgc 


Annotation confidence Low
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Genome context
JH000052.1: 3327293-3327373 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-365
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-365-5p

Accession MIMAT0023935
Description Cricetulus griseus cgr-miR-365-5p mature miRNA
Sequence 10 - AGGGACUUUUGGGGGCAGAUGUG - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-365-3p

Accession MIMAT0023936
Description Cricetulus griseus cgr-miR-365-3p mature miRNA
Sequence 50 - UAAUGCCCCUAAAAAUCCUUAU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75