Stem-loop cgr-mir-190a

Accession

MI0020434

Description

Cricetulus griseus cgr-mir-190a precursor miRNA

Sequence

4696 reads, 21.0 reads per million, 55 experiments

gccucugugUGAUAUGUUUGAUAUAUUAGGUUGuuauuuaauccaACUAUAUAUCAAGCAUAUUCCUacagugucuugcc
..(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).......

Structure

-----gc u     -U                UA     uuau 
       c cugug  GAUAUGUUUGAUAUAU  GGUUG    u
       | |||||  ||||||||||||||||  |||||     
       g gacaU  UUAUACGAACUAUAUA  UCAac    u
ccguucu u     CC                --     cuaa 

Annotation confidence High

Genome context

JH000151.1: 1147508-1147587 [+]

Mature cgr-miR-190a-5p

• Accession: MIMAT0023819
• Description: Cricetulus griseus cgr-miR-190a-5p mature miRNA
• Sequence: 10 - UGAUAUGUUUGAUAUAUUAGGUUG - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-190a-3p

• Accession: MIMAT0052440
• Description: Cricetulus griseus cgr-miR-190a-3p mature miRNA
• Sequence: 46 - ACUAUAUAUCAAGCAUAUUCCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75