Stem-loop cgr-mir-181b

Accession

MI0020421

Description

Cricetulus griseus cgr-mir-181b precursor miRNA

Literature search

1 open access papers mention cgr-mir-181b
(2 sentences)

Sequence

296610 reads, 1355.0 reads per million, 55 experiments

gucacaaucAACAUUCAUUGCUGUCGGUGGGUUGaacuguguagaaaagCUCACUGAACAAUGAAUGCAAcuguggcc
((((((.....(((((((((...((((((((((...((....))...)))))))))).)))))))))....)))))).

Structure

-      aucAA         CUG          Gaa  g 
 gucaca     CAUUCAUUG   UCGGUGGGUU   cu u
 ||||||     |||||||||   ||||||||||   ||  
 cggugu     GUAAGUAAC   AGUCACUCga   ga g
c      -cAAC         --A          aaa  u 

Annotation confidence High

Genome context

JH000549.1: 850698-850775 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-181b

Mature cgr-miR-181b-5p

• Accession: MIMAT0023799
• Description: Cricetulus griseus cgr-miR-181b-5p mature miRNA
• Sequence: 10 - AACAUUCAUUGCUGUCGGUGGGUUG - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-181b-3p

• Accession: MIMAT0023800
• Description: Cricetulus griseus cgr-miR-181b-3p mature miRNA
• Sequence: 50 - CUCACUGAACAAUGAAUGCAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75