Stem-loop cgr-mir-149

Accession

MI0020411

Description

Cricetulus griseus cgr-mir-149 precursor miRNA

Sequence

31093 reads, 432 reads per million, 6 experiments

ugcccgggcUCUGGCUCCGUGUCUUCACUCCcguguuuguccgaggaggGAGGGAGGGACGGGGGCGGUGCuggggcaacu
(((((.(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).))).)))))...

Structure

---     g   U   G      G     A     g g  u 
   ugccc ggc CUG CUCCGU UCUUC CUCCc u uu g
   ||||| ||| ||| |||||| ||||| ||||| | || u
   acggg uCG GGC GGGGCA GGAGG GAGgg g ag c
uca     g   U   G      G     -     a g  c 

Annotation confidence Low

Genome context

JH000147.1: 456759-456839 [+]

Mature cgr-miR-149-5p

• Accession: MIMAT0023780
• Description: Cricetulus griseus cgr-miR-149-5p mature miRNA
• Sequence: 10 - UCUGGCUCCGUGUCUUCACUCC - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-149-3p

• Accession: MIMAT0023781
• Description: Cricetulus griseus cgr-miR-149-3p mature miRNA
• Sequence: 50 - GAGGGAGGGACGGGGGCGGUGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75