Stem-loop cgr-mir-138

Accession

MI0020400

Description

Cricetulus griseus cgr-mir-138 precursor miRNA

Sequence

2188 reads, 30 reads per million, 6 experiments

gguugcugcAGCUGGUGUUGUGAAUCAGGCcgacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugc
....((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))

Structure

gguu  u  AG             UCA     -ac   c  cg 
    gc gc  CUGGUGUUGUGAA   GGCcg   gag ag  c
    || ||  |||||||||||||   |||||   ||| ||   
    cg ug  gaccacagcacuu   ucggc   uuc uc  a
----  u  -g             -ua     cca   -  cu 

Annotation confidence Low

Genome context

JH000405.1: 970785-970864 [+]

Mature cgr-miR-138

• Accession: MIMAT0023764
• Description: Cricetulus griseus cgr-miR-138 mature miRNA
• Sequence: 10 - AGCUGGUGUUGUGAAUCAGGC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75