Stem-loop bna-MIR2111c

Accession

MI0020294

Description

Brassica napus bna-MIR2111c precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

3 open access papers mention bna-MIR2111c
(3 sentences)

Sequence

uauuggugaggaccgggUAAUCUGCAUCCUGGGGUUUAcgguuuaagaacacacaaagugugcguaugcauauguauauguguguuaguaaagcuuuuagaccucaggaugcggauuaccucuuccuuacaauacg
(((((.((((((..((((((((((((((((((((((((.(.((((..((((((((..((((((....)))))).....))))))))..)))).)...))))))))))))))))))))))))..)))))))))))..

Structure

--     g      cc                        --c g    ag        ---aa      g 
  uauug ugagga  gggUAAUCUGCAUCCUGGGGUUUA   g uuua  aacacaca     gugugc u
  ||||| ||||||  ||||||||||||||||||||||||   | ||||  ||||||||     ||||||  
  auaac auuccu  uccauuaggcguaggacuccagau   c aaau  uugugugu     uauacg a
gc     -      uc                        uuu g    ga        auaug      u 

Annotation confidence Not enough data

Genome context

EM:BH979745: 325-460 [-]

Mature bna-miR2111c

• Accession: MIMAT0023647
• Description: Brassica napus bna-miR2111c mature miRNA
• Sequence: 18 - UAAUCUGCAUCCUGGGGUUUA - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823