Stem-loop bna-MIR172c

Accession

MI0020279

Description

Brassica napus bna-MIR172c precursor miRNA

Literature search

12 open access papers mention bna-MIR172c
(48 sentences)

Sequence

cagccgguaguugcagaugcagcaucaucaagauucacaagugaagugguuuccuugguuuucgccucuccauccgaaaacaaaggguucuucucgaaugGGAAUCUUGAUGAUGCUGCAUcagcauauacauggcua
.((((((((..(((.(((((((((((((((((((((.((..(((.(.((..(((((.(((((((..........))))))).)))))..)).))))..)).))))))))))))))))))))).)))..))).))))).

Structure

c     -   gu   a                     a  ag   a u  uu     g       ccuc 
 agccg gua  ugc gaugcagcaucaucaagauuc ca  uga g gg  uccuu guuuucg    u
 ||||| |||  ||| ||||||||||||||||||||| ||  ||| | ||  ||||| |||||||     
 ucggu cau  acg cUACGUCGUAGUAGUUCUAAG gu  gcu c uc  gggaa caaaagc    c
a     a   au   a                     G  aa   - u  uu     a       cuac 

Annotation confidence Not enough data

Genome context

EM:AC189559: 3489-3626 [+]

Mature bna-miR172c

• Accession: MIMAT0023632
• Description: Brassica napus bna-miR172c mature miRNA
• Sequence: 101 - GGAAUCUUGAUGAUGCUGCAU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823