Stem-loop tca-mir-927b

Accession

MI0020230

Description

Tribolium castaneum tca-mir-927b precursor miRNA

Sequence

224722 reads, 1150.0 reads per million, 33 experiments

cgcccuuugagcccuuccgguUUUAGAAUCUGUACGCUUUGUUGuuacuuuaaaaUCACAGAGCUUACGGAUUCUCGAacugguggaguauuaaac
.....(((((((((..(((((((.((((((((((.(((((((.(((.......))).))))))).)))))))))).))))))).)).)).))))).

Structure

cgccc     -  -  uu       U          C       U   ac 
     uuuga gc cc  ccgguUU AGAAUCUGUA GCUUUGU Guu  u
     ||||| || ||  ||||||| |||||||||| ||||||| |||  u
     aaauu ug gg  ggucaAG UCUUAGGCAU CGAGACA Uaa  u
----c     a  a  -u       C          U       C   aa 

Annotation confidence High

Genome context

ref|NC_007424.3|: 11684270-11684365 [-]

Mature tca-miR-927b-5p

• Accession: MIMAT0023579
• Description: Tribolium castaneum tca-miR-927b-5p mature miRNA
• Sequence: 22 - UUUAGAAUCUGUACGCUUUGUUG - 44
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-927b-3p

• Accession: MIMAT0023580
• Description: Tribolium castaneum tca-miR-927b-3p mature miRNA
• Sequence: 56 - UCACAGAGCUUACGGAUUCUCGA - 78
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323