Stem-loop tca-mir-6007

Accession

MI0020218

Description

Tribolium castaneum tca-mir-6007 precursor miRNA

Sequence

43603 reads, 401.0 reads per million, 34 experiments

auuggucuuaugguaCAAAGACGUUAGAAACAGGACUAcgaaauuaauuauggUUCUGUCUCUUUCGUUUUGCAucaugggaacaua
..((.(((((((((.(((.((((..(((.(((((((((.((......)).))))))))).)))..))))))).))))))))).))..

Structure

au  g         a   A    UU   A         c  aa 
  ug ucuuauggu CAA GACG  AGA ACAGGACUA ga  u
  || ||||||||| ||| ||||  ||| ||||||||| ||   
  ac aggguacuA GUU UUGC  UCU UGUCUUggu uu  u
au  a         C   -    UU   C         a  aa 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6591082-6591168 [+]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-6007

Mature tca-miR-6007-5p

• Accession: MIMAT0023555
• Description: Tribolium castaneum tca-miR-6007-5p mature miRNA
• Sequence: 16 - CAAAGACGUUAGAAACAGGACUA - 38
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6007-3p

• Accession: MIMAT0023556
• Description: Tribolium castaneum tca-miR-6007-3p mature miRNA
• Sequence: 54 - UUCUGUCUCUUUCGUUUUGCA - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323