Stem-loop ame-mir-6004

Accession

MI0020214

Description

Apis mellifera ame-mir-6004 precursor miRNA

Sequence

ggauacguuaacGAAUGGAGCGUUAAUGAUCGuguuucuaaauuguaucaaugacgagagucaCGAUUGCGUUGCGUUCUACggucuc
((((.(((....(((((.(((((....(((((((.((((..((((...))))....)))).)))))))))))).))))).))))))).

Structure

-    a   uaac     G     UAAU       u    --aa    u 
 ggau cgu    GAAUG AGCGU    GAUCGug uucu    auug  
 |||| |||    ||||| |||||    ||||||| ||||    |||| a
 ucug gCA    CUUGC UUGCG    UUAGCac gaga    uaac  
c    -   ---U     G     ----       u    gcag    u 

Annotation confidence Not enough data

Genome context

CM000058.5: 8491723-8491810 [-]

Mature ame-miR-6004-5p

• Accession: MIMAT0023547
• Description: Apis mellifera ame-miR-6004-5p mature miRNA
• Sequence: 13 - GAAUGGAGCGUUAAUGAUCG - 32
• Evidence: experimental ; SOLiD [1]

Mature ame-miR-6004-3p

• Accession: MIMAT0023548
• Description: Apis mellifera ame-miR-6004-3p mature miRNA
• Sequence: 64 - CGAUUGCGUUGCGUUCUAC - 82
• Evidence: experimental ; SOLiD [1], Illumina [3]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226