Stem-loop dpr-MIR172a

Accession

MI0020205

Description

Digitalis purpurea dpr-MIR172a precursor miRNA

Literature search

1 open access papers mention dpr-MIR172a
(4 sentences)

Sequence

agucguuuauuaucuggugugguaucaucaagauucacaugaaaccuaguuguuucaauggugaugaugAGAAUCUUGAUGAUGCUGCAUcggaaaaaaaugacu
((((((((.((.((((((((((((((((((((((((.(((.(.(((..((((...)))))))..).))).)))))))))))))))))))))))).))))))))))

Structure

        a  a                        a   g -a   ua    u 
agucguuu uu ucuggugugguaucaucaagauuc cau a  acc  guug  
|||||||| || |||||||||||||||||||||||| ||| |  |||  |||| u
ucaguaaa aa aggcUACGUCGUAGUAGUUCUAAG gua u  ugg  uaac  
        -  a                        A   g ag   --    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature dpr-miR172a

• Accession: MIMAT0023534
• Description: Digitalis purpurea dpr-miR172a mature miRNA
• Sequence: 70 - AGAAUCUUGAUGAUGCUGCAU - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 22233149
   Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
   Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
   BMC Genomics (2012) 13:15