Stem-loop dpr-MIR167c

Accession

MI0020204

Description

Digitalis purpurea dpr-MIR167c precursor miRNA

Literature search

1 open access papers mention dpr-MIR167c
(3 sentences)

Sequence

ugagagguUGAAGCUGCCAGCAUGAUCUGaccauuacagacuucaucaucuccauucuuccaaaaugauuccuacuugcuaauuauggaaaucccauuugaucaucuaaucaucaaguuucagaagaaugguuauaaguuaaugaucaggucaucuugcagcuucaaucacucu
.(((.((((((((((((.((.(((((((((.(((((...((((....((..(((((((((..(((((((...((..((......((((.....)))).....))..))...))))..)))..)))))))))..))))))))))).))))))))))).)))))))))))).))).

Structure

u   a            C  C         c     cag    cauc  cu         ca   --    ucc  cu  cuaauu    a 
 gag gguUGAAGCUGC AG AUGAUCUGa cauua   acuu    au  ccauucuuc  aaa  ugau   ua  ug      augg a
 ||| |||||||||||| || ||||||||| |||||   ||||    ||  |||||||||  |||  ||||   ||  ||      |||| a
 cuc cuaacuucgacg uc uacuggacu guaau   ugaa    ua  gguaagaag  uuu  acua   au  ac      uacc u
u   a            u  -         a     ---    ----  uu         ac   ga    cua  cu  -uaguu    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature dpr-miR167c

• Accession: MIMAT0023533
• Description: Digitalis purpurea dpr-miR167c mature miRNA
• Sequence: 9 - UGAAGCUGCCAGCAUGAUCUG - 29
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 22233149
   Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
   Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
   BMC Genomics (2012) 13:15