Stem-loop hco-mir-84b

Accession

MI0020176

Description

Haemonchus contortus hco-mir-84b precursor miRNA

Literature search

1 open access papers mention hco-mir-84b
(1 sentences)

Sequence

gggugucuaaUGAGGUAGUUAAGCACAGGUAcuacauuaagcuguaaauuaaaauuguacgcuugagaagcuccugguucuuacuuaccgucuauuggcag
...((.((((((((((((.((((..((((..((.(.((((((.(((...........)))))))))).))..))))...)))).))))).)).))))))).

Structure

ggg  u     -  -     U    -CA    UA  a a      u   aauu 
   ug cuaaU GA GGUAG UAAG   CAGG  cu c uuaagc gua    a
   || ||||| || ||||| ||||   ||||  || | |||||| |||    a
   ac gguua cu ccauu auuc   gucc  ga g aguucg cau    a
--g  -     u  g     c    uug    uc  a -      -   guua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-84b

• Accession: MIMAT0023507
• Description: Haemonchus contortus hco-miR-84b mature miRNA
• Sequence: 11 - UGAGGUAGUUAAGCACAGGUA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4